By Kubilay Demir, Michael Boutros (auth.), Richard S. Larson (eds.)
Recent advances in drug discovery were speedy. the second one version of Bioinformatics and Drug Discovery hasbeen thoroughly up-to-date to incorporate subject matters that variety from new applied sciences in aim identity, genomic research, cheminformatics, protein research, and community or pathway research. every one bankruptcy presents a longer creation that describes the idea and alertness of the know-how. within the moment a part of every one bankruptcy, specific approaches regarding using those applied sciences and software program were included. Written within the hugely profitable Methods in Molecular Biology™ sequence layout, the chapters comprise the type of specified description and implementation suggestion that's an important for buying optimum leads to the laboratory.
Thorough and intuitive, Bioinformatics and Drug Discovery, moment variation seeks to help scientists within the additional learn of the speedily increasing box of drug discovery.
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Additional info for Bioinformatics and Drug Discovery
AltAnalyze processes the user’s raw microarray data: grouping of raw expression data (experimental vs. control group), normalization, summarization, and filtering. After computing the gene expression summary, alternative probeset expression within the experimental and control groups is calculated. This results in a series of probeset and gene expression summary files along with overrepresentation statistics for the expression of protein and miRNA-binding site features as well as for pathways. The probeset statistics file can then be loaded into DomainGraph for further analysis.
Molecular Factors in the Pathogenesis of Dupuytren’s Disease Molecular profile of pathological changes in DD is complex, and involves many molecular factors that belong to several different cellular processes and pathways (Fig. 2). Abnormal growth factor expression, in particular those of cytokines basic fibroblast growth factor (bFGF) and transforming growth factor beta (TGF-b), are believed to primarily drive at least two molecular processes in Dupuytren’s disease: (a) proliferation of fibroblasts and their differentiation into myofibroblasts and (b) production of dense extracellular matrix containing elevated levels of fibronectin, type III collagen, and proteoglycans (10–12).
Fig. 3. Types of alternative splicing events. The colored boxes indicate exons, while the black triangles represent the inclusion and exclusion of DNA regions. (a) Shows a cassette exon (red), (b) highlights two mutually exclusive exons (red, blue), and (c) displays a retained intron (green). (d) and (e) show alternative 3¢ and 5¢ splice sites, respectively (pink). splicing in mammalian cells from human, mouse, and rat (25). org). org) (26) and is also included in the AltAnalyze package. de) or via the Cytoscape plugin manager.
Bioinformatics and Drug Discovery by Kubilay Demir, Michael Boutros (auth.), Richard S. Larson (eds.)