Read e-book online Advanced analysis of gene expression microarray data PDF

By Aidong Zhang

ISBN-10: 9812566457

ISBN-13: 9789812566454

This ebook is especially good written, in nice element and readability. The name "Advanced" sounds formidable to a few intermediate or access point statisticians, however the math information within the e-book is particularly comprehensible, offered as priceless help on the way to comprehend the defined statistical tools.
I may hugely suggest this booklet to statisticians with all statistical backgrounds who're new to the world of microarray information research. This e-book is ideal as a textbook for a primary process microarray information research too.

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Additional info for Advanced analysis of gene expression microarray data

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In the process of deposition-based manufacture, the DNA probes are prepared away from the chip. Probes can either be polymerase chain reaction (PCR) products or oligonucleotides. The PCR technique was developed in 1983 through the work of Kary B. Mullis and his colleagues at Cetus Corporation in Emeryville, California (Mullis, 1990) [202]. This technique creates billions of copies of specific fragments of DNA from a single DNA molecule. After the amplification, the PCR products are partially purified by precipitation and/or gel-filtration to remove unwanted salts, detergents, PCR primers and proteins present in the PCR cocktail [88].

4. 1 Sample Preparation and Labeling Sample preparation involves extracting and purifying the mRNAs from the tissue of interest. Due to a number of challenges, this procedure can be quite variable [10, 266]. First, the target mRNA typically accounts for only Overview of Microarray 37 Experiments mRNA reference sequence ' / 3" _ )',< \ / _ ___ Spaced DNA probe pairs \ ••- T G T G A T G G T G G G A A T G G G T C A G A A G G A C T C C T A T G T G G G T G A C G A G G C C FAATGGGTCAGA/IHGACTCCTATGTGGGTG •-• Perfect Match Oligo ~|_AATGGGTCAGAA|;J3ACTCCTATGTGGGTG Mismatch Oligo Perfect match probe cells Mismatch probe ceils Fig.

If one copy should happen to be defective, the other copy is available to compensate. Due to this protective mechanism, many 30 Advanced Analysis of Gene Expression Microarray Data genome variations do not produce any noticeable effects. However, the effects of a small percentage of genome variations are noticeable, with both and beneficial deleterious results. Much current research is focused on elucidating genotype-phenotype relationships, as the relationships between diseases and their genomic basis are termed.

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Advanced analysis of gene expression microarray data by Aidong Zhang

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